I organize by set now, which is something I resisted doing for years because it's unoriginal and sort of boring. However, it was the only practical way I could come up with because new cards come out all the time and doing it any other way would require massive amounts of reshuffling every three months. Originally I had my favorite card of each Pokemon in one binder, then all of the other cards in National Dex order, with all of the cards of the same Pokemon shoved together in one pocket. It became completely unpractical, especially for the Kanto Pokemon that upwards of 20+ cards.
Binder #1: Base - Legendary Collection (including Vending and VS)
Binder #2: Expedition - EX Dragon
Binder #3: EX Magma/Aqua - EX Unseen Forces
Binder #4: EX Delta Species - EX Power Keepers
Binder #5: Diamond and Pearl - Rising Rivals
Binder #6: Supreme Victors - Call of Legends
Binder #7: Black and White - Legendary Treasures
Binder #8: XY - Roaring Skies
Binder #9: All English Black Star promo sets, POP sets, Japanese movie half decks, etc.
Yep, the TCG has so much history now that it takes NINE BINDERS to document each and every set. And these aren't tiny one-inch binders, either. Most of them are three-inchers.
Binder #1: Base - Legendary Collection (including Vending and VS)
Binder #2: Expedition - EX Dragon
Binder #3: EX Magma/Aqua - EX Unseen Forces
Binder #4: EX Delta Species - EX Power Keepers
Binder #5: Diamond and Pearl - Rising Rivals
Binder #6: Supreme Victors - Call of Legends
Binder #7: Black and White - Legendary Treasures
Binder #8: XY - Roaring Skies
Binder #9: All English Black Star promo sets, POP sets, Japanese movie half decks, etc.
Yep, the TCG has so much history now that it takes NINE BINDERS to document each and every set. And these aren't tiny one-inch binders, either. Most of them are three-inchers.