@Water Pokémon Master
The first few cards have the wrong numbers. Weedle, Kakuna and Beedrill are numbers 5, 6 & 7 respectively, followed by Tangela (#8) and then the Charmander line (#9, #10 & #11), with Charizard-EX being #12. Everything else is okay.
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As for the missing spots... It is now clear that, unfortunaly, this is a near copy/paste of Base Set. As such:
#3 Caterpie
#4 Metapod
Slowbro Spiritual Link?
My Educate Guesses on what The Pokemon are At Least:
#17 Growlithe/Magmar
#18 Arcanine/Squirtle
#18 Ponyta/Wartortle
#20 Magmar/Blastoise
Yup. Either one of these 2 scenarios. Since the original Venusaur line is not included, I think the first scenario is the most likely one.
#28 Seel
#28 Dewgong
#37 Magnemite
#38 Magneton
Same here.
Yeah, It could be either Jynx or Koffing. I'd prefer Jynx but since it suffers a bit from the same problem as Kadabra, they might put Koffing in there instead.
Same here.
#62 Pidgey
#63 Pidgeotto
#67 Clefairy
#68 Farfetch'd
Okay, no. This is where people are creating problems that don't exist. There's already a Pidgeot-EX/Mega Pidgeot-EX in the set, why would they put the incomplete regular Pidgey/Pidgeotto line in there? (And before someone mentions the Charizard line, that is the exception, not the rule).
#62 can be Hitmonchan, the last Fighting card by National dex order, so it comes after Onix which is #61.
After Rattata (#66) is obviously Raticate, so #67 is set. I mean, why wouldn't they include Raticate?
Between Raticate and Doduo goes Farfetch'd.
So, what about Clefairy? Clefairy goes for spot #63 as a Fairy-type card. It fits perfectly. Why are people in such disbelief that Clefairy won't be a Fairy-type card? I think it'll be really dumb of PCL if they keep Clefairy as a Colorless-type.