For the record, I am Christian, but I still think a lot of those are way out of line.
Jigglypuff the "gay" and "out" Pokemon that puts people into a drug-illlict-like state? Uh.....this is poorly researched. All they are doing is falling asleep. Is there something evil with sleep? NO.
Metapod the ultra-rare and powerful Pokemon based around a Muslim worship? Go look at cucoons (sp?) and get back to me on the whole, "They are shaped that way because of Muslim beliefs."
Pikachu trying to be a Pooh-Bear? Ugh, it is a mouse, hello. Don't even know where they got the idea that it looked like a bear.
Also, evolving isn't really like the evolution theory that Darwin thought. (Which, for the record, I don't believe.) Evolving in the Pokemon world is more like growing up. In the Evolution theory, it takes Millions of years for this to happen. In Pokemon? Less than a month, and that is almost the case in all three areas of Pokemon. Only the Anime may take longer than a month to evolve.
Caterpie is a good example of the "Growing Up" theory I mentioned. A normal butterfly goes through all the stages a Butterfree dies. You will find that a lot of Pokemon really just look like a bigger version of their Pre-Evos.
Sorry, but until I see a Pokemon that goes from monkey to human-like creature, I'm not going to go all that against Pokemon.