Ok, here is a list:
Shinies:
Lv. 40 Golbat: I don't think it's touched, but it came from Hoenn at lvl. 40. Can you catch Golbats at that level?
Lv. 100 Machamp: It's been obviously touched, but I think it's been ev'd in Attack
Lv. 18 Ponyta: I don't think it's been touched.
Lv. 100 Deoxys: It's Japanese, and I think it may have been hacked. I don't know for sure since I got it in a GTS Trade.
Lv. 100 Mew: I think it was hacked. But... it's shiny!
Lv. 100 Crobat: It was obviously touched.
Lv. 51 Swellow: It was obviously touched.
Lv. 100 Salamence: It was touched, but I think it may have been ev'd in Attack
Lv. 51 Floatzel: It wasn't touched.
Lv. 55 Ambipom: It was touched
Lv. 12 Buneary: It was touched, but it never leveled up. I don't know if that counts.
Here are some events:
Lv. 100 Japanese Movie Regigigas
Lv. 30 Shiny Shaymin, caught at Flower Paradise: It's japanese, and I have no idea of its hacked or not. Wasn't touched.
Lv. 50 Japanese Movie Shaymin, untouched
That's basically it. Also, I have a few questions.
1. Do you clone your pokemon? Yep
2. If you do, would you be willing to clone any of the above listed pokemon so that I can get the other copy? Yep, I can clone and trade back the originals
3. If a Pokemon is an event and the OT is TRU, is the color supposed to be red or blue? According to Bulbapedia, BLUE